We propose an integrated computational model for the network of cyclin-dependent kinases (Cdks) that controls the dynamics of the mammalian cell cycle. The model contains four Cdk modules regulated by reversible phosphorylation, Cdk inhibitors, and protein synthesis or degradation. Growth factors (GFs) trigger the transition from a quiescent, stable steady state to self-sustained oscillations in the Cdk network. These oscillations correspond to the repetitive, transient activation of cyclin D/Cdk4 -6 in G 1, cyclin E/Cdk2 at the G 1/S transition, cyclin A/Cdk2 in S and at the S/G2 transition, and cyclin B/Cdk1 at the G2/M transition. The model accounts for the following major properties of the mammalian cell cycle: (i) repetitive cell cycling in the presence of suprathreshold amounts of GF; (ii) control of cell-cycle progression by the balance between antagonistic effects of the tumor suppressor retinoblastoma protein (pRB) and the transcription factor E2F; and (iii) existence of a restriction point in G 1, beyond which completion of the cell cycle becomes independent of GF. The model also accounts for endoreplication. Incorporating the DNA replication checkpoint mediated by kinases ATR and Chk1 slows down the dynamics of the cell cycle without altering its oscillatory nature and leads to better separation of the S and M phases. The model for the mammalian cell cycle shows how the regulatory structure of the Cdk network results in its temporal self-organization, leading to the repetitive, sequential activation of the four Cdk modules that brings about the orderly progression along cell-cycle phases. cellular rhythms ͉ oscillations ͉ mitotic oscillator ͉ model ͉ systems biology I n the presence of sufficient amounts of growth factor (GF), mammalian cells quit a quiescent state, denoted G 0 , and start their progression in the cell cycle (1-3). During the G 1 phase, cells pass the restriction point, which is a point of no return beyond which they are irreversibly engaged in the cell cycle and do not require the presence of GF to complete mitosis (1, 2). Progression in the cell cycle is controlled by the sequential, transient activation of a family of cyclin-dependent kinases (Cdks), which allow an ordered succession of the cell-cycle phases G 1 , S, G 2 , and M (4, 5), even though there appears to be a certain overlapping of the different cyclins and Cdks (6). The Cdk proteins are active only when forming a complex with their corresponding cyclin. The cyclin D/Cdk4-6, cyclin E/Cdk2, cyclin A/Cdk2, and cyclin B/Cdk1 complexes promote, respectively, progression in G 1 , the transition to DNA replication in S, progression in S and transition to G 2 , and finally the G 2 /M transition allowing entry into mitosis (3-7). Cdk regulation is achieved through a variety of mechanisms that include association with cyclins and protein inhibitors, phosphorylationdephosphorylation (8), and cyclin synthesis or degradation (9).A number of theoretical models for the cell cycle have been proposed. Initially, these models pertained t...