Although the enzymatic activity of isocitrate dehydrogenase 1 (IDH1) was defined decades ago, its functions in vivo are not yet fully understood. Cytosolic IDH1 converts isocitrate to α-ketoglutarate (α-KG), a key metabolite regulating nitrogen homeostasis in catabolic pathways. It was thought that IDH1 might enhance lipid biosynthesis in liver or adipose tissue by generating NADPH, but we show here that lipid contents are relatively unchanged in both IDH1-null mouse liver and IDH1-deficient HepG2 cells generated using the CRISPR-Cas9 system. Instead, we found that IDH1 is critical for liver amino acid (AA) utilization. Body weights of IDH1-null mice fed a high-protein diet (HPD) were abnormally low. After prolonged fasting, IDH1-null mice exhibited decreased blood glucose but elevated blood alanine and glycine compared with wildtype (WT) controls. Similarly, in IDH1-deficient HepG2 cells, glucose consumption was increased, but alanine utilization and levels of intracellular α-KG and glutamate were reduced. In IDH1-deficient primary hepatocytes, gluconeogenesis as well as production of ammonia and urea were decreased. In IDH1-deficient whole livers, expression levels of genes involved in AA metabolism were reduced, whereas those involved in gluconeogenesis were up-regulated. Thus, IDH1 is critical for AA utilization in vivo and its deficiency attenuates gluconeogenesis primarily by impairing α-KG-dependent transamination of glucogenic AAs such as alanine.isocitrate dehydrogenase 1 | α-ketoglutarate | gluconeogenesis | transamination | liver I socitrate dehydrogenases (IDH) convert isocitrate to α-ketoglutarate (α-KG) by reducing NADP + or NAD + . The recent discovery of IDH1 and IDH2 mutations in human cancers (1-4) has elicited new interest in defining IDH1's functions in vivo, which are still poorly understood. IDH1 is abundant in liver and was reported to participate in lipid biosynthesis in hepatocyte cytoplasm and peroxisomes (5, 6). Mutant mice overexpressing IDH1 in liver and adipose tissue are obese, have fatty livers, and show elevated plasma triglycerides (TG) and cholesterol (7). In tumor cells, IDH1 contributes to de novo lipogenesis by generating acetyl-CoA building blocks via the NADPH-dependent reductive carboxylation of α-KG to isocitrate (8-11). However, IDH1-null mice at steady-state are healthy and fertile, maintain normal body weight, and show no inflammatory symptoms (12).The liver maintains normal blood glucose levels through glycogenolysis and gluconeogenesis. Gluconeogenesis generates glucose from noncarbohydrate carbon substrates such as pyruvate, lactate, glycerol, and glucogenic amino acids (AAs). During prolonged fasting, the breakdown of skeletal muscle generates limited carbon resources in the form of AAs such as alanine. Hence, both fasting and feeding of a high-protein diet (HPD) can stimulate AA deamination and urea production in the liver (13), where AA carbon skeletons are converted into glucose or lipids. For most AAs, the amino group is transferred to α-KG to generate glutama...