2014
DOI: 10.1186/1471-2164-15-957
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De-novo assembly of mango fruit peel transcriptome reveals mechanisms of mango response to hot water treatment

Abstract: BackgroundThe mango belongs to the genus Mangifera, consisting of numerous tropical fruiting trees in the flowering plant family, Anacardiaceae. Postharvest treatment by hot water brushing (HWB) for 15–20 s was introduced commercially to improve fruit quality and reduce postharvest disease. This treatment enabled successful storage for 3–4 weeks at 12°C, with improved color and reduced disease development, but it enhanced lenticel discoloration on the fruit peel. We investigated global gene expression induced … Show more

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Cited by 67 publications
(56 citation statements)
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References 70 publications
(72 reference statements)
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“…Currently a few genomic resources are available for avocado, mango and macadamia. Most of the publicly available de novo transcriptome assemblies of avocado and mango are limited to either leaf or fruit tissue [4][5][6][7] . Only two studies published open-access transcriptome assemblies from several tissues of avocado and mango respectively [8][9][10] .…”
Section: Background and Summarymentioning
confidence: 99%
“…Currently a few genomic resources are available for avocado, mango and macadamia. Most of the publicly available de novo transcriptome assemblies of avocado and mango are limited to either leaf or fruit tissue [4][5][6][7] . Only two studies published open-access transcriptome assemblies from several tissues of avocado and mango respectively [8][9][10] .…”
Section: Background and Summarymentioning
confidence: 99%
“…As the whole genome of mango is not available, the publically available de novo assembled transcripts were used for the prediction of candidate lncRNAs. A total of 277,071 mango transcripts obtained from Zill, Shelly and Keitt mango cultivars [40,[52][53][54] were used in this study. A total of 1998 mango mRNAs downloaded from NCBI were used for the target prediction of miRNAs and lncRNAs.…”
Section: Data Collectionmentioning
confidence: 99%
“…Metagenomic assembly programs like SOAPdenovo [72], ABySS [73] and Velvet-Oases [74] could be very well applied for meta-transcriptome data assembly [75][76][77][78], further the function of the expressed genes can be identified using databases like KEGG [79]. Trinity is now most widely used program for de novo assembly of short read RNA sequence-data because of its efficiency in recovering full length transcripts [80][81][82]. This direct sequencing of RNA from environmental sample is emerging as a powerful technique for elucidating the in-situ activities of soil microbial communities.…”
Section: Meta-transcriptomicsmentioning
confidence: 99%