ABSTRACT:Since its first description more than 30 years ago p53 has become a paradigm for a protein with versatile functions. P53 sensitizes a large variety of genetic alterations and has been entitled the guardian of the genome. Stabilization of p53 upon DNA damage is accompanied by a complex pattern of modifications, which ascertain the cellular response either in the direction of a reversible or irreversible cell cycle arrest or programmed cell death. More recently it became evident that p53 also responds to non-genotoxic cell stress, in particular if ribosome biogenesis is affected.
P53 degradation requires ribosome biogenesisThe nucleolus is the place of ribosome biogenesis. Here, the ribosomal RNA precursor is transcribed and processed into mature 28S, 18S, and 5.8S rRNAs. Ribosomal RNAs assemble with ribosomal proteins in 40S and 60S ribosomal subunits and are exported via the nucleoplasm into the cytoplasm. In a hallmark study, Rubbi and Milner [1] identified the nucleolus as the key structure in the control of p53 stability in UV-irradiated cells. They found that localized UV-induced pyrimidine dimers in nucleoplasmic DNA failed to stabilize p53, while the same DNA damage in nucleolar DNA stabilized p53. How does DNA damage in the nucleolus differ from DNA damage in the nucleoplasm? The genes for rRNA are organized in clusters on mammalian chromosomes, and transcription of rRNA genes leads to the establishment of nucleolar structures. Thus, it was tempting to speculate that not DNA damage itself was critical for p53 stabilization, but rather impaired expression of the rRNA genes. To test this assumption, Rubbi and Milner applied chemical drugs, genetic knockdowns, or microinjection experiments with antibodies to interfere with rRNA transcription. From these studies a model emerged with ribosome biogenesis as an essential prerequisite for p53 degradation.The production of ribosomes in the nucleolus is comparable with an assembly line in a modern car factory. Each component is delivered just in time at the right place. Already during synthesis the nascent 47S rRNA precursor associates with ribosomal and non-ribosomal proteins and assembles in mammals in the 90S pre-ribosome. The nonribosomal proteins regulate a multitude of different steps, which involve the modification of the rRNA by methylation and pseudo-uridinylation, the removal of external and internal transcribed rRNA sequences (ETS and ITS) from the primary transcript by endo-and exonucleases, the separation of the preribosomal 90S complex into the 40S and 60S ribosomal subunits, and finally the transport of the subunits from the nucleolus into the cytoplasm. In growing cells the production of ribosomes consumes up to twothirds of the cellular energy and the assembly line can be interrupted at many different sites.Here we have interrupted ribosome biogenesis by knockdown of three assembly factors for the 60S subunit. The factors Pes1, Bop1, and WDR12 are constituents of the PeBoW-complex. Knockdown of each component ( Figure 1A) or expression ...