The protozoa of the genus Neospora spp. (Apicomplexa, Sarcocystidae) are capable of infecting equines causing different clinical manifestations. However, the pathogenesis of these protozoa in horses has not been fully explained yet. Two species of the genus Neospora spp. have already been described parasitizing equines -Neospora caninum and Neospora hughesi. The infection by N. caninum is mainly characterized by reproductive problems and neonatal illness, and N. hughesi is associated with myeloencephalitis (Dubey and Porterfield, 1990;Lindsay, 2001).N. caninum was firstly described in dogs in Norway (Bjerkas et al., 1984), from there on, it has been described in many warm-blooded species (Dubey and Lindsay, 1996). N. hughesi has been reported for the first time by Marsh et al. (1998) who isolated a protozoan very similar to N. caninum (however, with structural and molecular differences) from brain and spinal marrow of a horse that was showing signs compatible with equine protozoal myeloencephalitis (EPM).The biological cycle of N. caninum was described by McAllister et al. (1998) and involves definitive (DH) and intermediate (IH) hosts. The definitive ones are dogs and coyotes (McAllister et al., 1998;Gondim et al., 2004) and, besides sheltering the agent, they are Recebido em 16 de outubro de 2010 Aceito em 25 de fevereiro de 2011 E-mail: gugatoscan@hotmail.com characterized by excreting oocysts in their feces. These oocysts sporulate in the environment becoming infective for the IH, group in which fit several mammalian species (Dubey and Lindsay, 1996).N. caninum can disseminate itself in susceptible populations by the horizontal route (sporulated oocysts), and by the vertical transmission via placenta (by tachyzoites). In the stage of tachyzoite, the protozoan is able to accomplish parasitaemia and new cells invasion. The infected IH develop cysts containing bradyzoites (slow multiplication form), and the DH are infected by eating tissues containing these cysts (Dubey et al., 2007).The biological cycle of N. hughesi was not entirely elucidated until the moment; its definitive host is unknown, as well as other possible intermediate hosts besides equines. Consequently, the infection routes for N. hughesi in horses are not determined (Hoane et al., 2006). The discovery of N. hughesi as a possible etiological agent of EPM turned out to be of great importance in its diagnosis, since Neospora spp. has been reported in cases of this pathology (Marsh et al., 1998). However, it is still undefined if both protozoan species are able to cause this kind of myeloencephalitis. Serum samples were obtained from 241 horses aging from four to 14 years old, being 91 from cart horses and the other 123 from Crioula breed horses. The blood samples were collected from jugular vein in vacutainer tubes. After the retraction of the clot, the serum was collected and kept under low temperature or frozen until processing. The cart horses were used to carry loads and most of them had no defined breed and Crioula breed horses were fro...