traditionally, the study of anatomy in insects has been based on dissection techniques. Microcomputed tomography (micro-ct) is an X-ray based technique that allows visualization of the internal anatomy of insects in situ and does not require dissections. We report on the use of micro-ct scans to study, in detail, the internal structures and organs of the coffee berry borer (Hypothenemus hampei), the most damaging insect pest of coffee worldwide. Detailed images and videos allowed us to make the first description of the aedeagus and the first report of differences between the sexes based on internal anatomy (flight musculature, midgut shape, hindgut convolutions, brain shape and size) and external morphology (lateral outline of the pronotum and number of abdominal tergites). This study is the first complete micro-ct reconstruction of the anatomy of an insect and is also the smallest insect to have been evaluated in this way. High quality rendered images, and additional supplementary videos and 3D models are suitable for use with mobile devices and are useful tools for future research and as teaching aids. Ever since the introduction of coffee from Africa to various continents, it has become an important commodity not only to producing countries, but also to billions of consumers that take delight on its flavour, aroma, and stimulatory effects 1. Amongst the many agronomic problems faced by coffee producers, insect pests and plant pathogens are of paramount importance 2. Climate change is also posing an enormous challenge to the continuity of commercial coffee production and to the survival of wild coffee species 3,4. The coffee berry borer, Hypothenemus hampei (Ferrari) (Coleoptera: Curculionidae: Scolytinae: Cryphalini), is the most economically important insect pest of coffee due to its cryptic life cycle inside the coffee berry, which makes it quite hard to manage 5. The insect is currently present in most coffee producing countries 5 and worldwide losses are likely over US$500 million, with yearly losses in Brazil alone estimated at US$215-358 million 6. The insect has also been reported to have infested vast areas, e.g., over 715,000 ha in Colombia by 1998 7 and more than 800,000 ha by 2002 8. Even though > 1,800 papers have been published on the coffee berry borer 9 , knowledge about its internal anatomy is restricted to a handful of papers that use dissection techniques 10-14. Insect dissection techniques were first used more than 400 years ago by Aldrovandi 15 and Malpighi 16. Even though dissections have most definitely been useful, resulting in thousands of papers on the internal anatomy of insects, they result in an inevitable distortion of the internal structures and organs. A relatively new technique based on X-rays, known as micro-computed tomography (micro-CT), allows visualization of the insect's internal anatomy in situ, without the need for dissection; results have been validated by comparing them with classical destructive methodologies 17,18. We present a detailed study of all the anatomical st...