9The invasive fall armyworm (FAW), Spodoptera frugiperda (J.E. Smith) is a polyphagous pest that causes 10 widespread damage particularly to maize and sorghum in Africa. The microbiome associated with S.
11frugiperda could play a role in their success and adaptability. However, these bacterial communities remain 12 poorly studied, especially for S. frugiperda in Africa. We investigated the composition, abundance and 13 diversity of microbiomes associated with larval and adult specimens of S. frugiperda collected from four 14 maize growing regions in Kenya through high throughput sequencing of bacterial 16S rRNA gene. We 15 identified Proteobacteria and Firmicutes as the most dominant phyla and lesser proportions of 16 Bacteroidetes and Actinobacteria. We also observed differences in bacterial microbiome diversity between 17 larvae and adults that are a likely indication that some prominent larval bacterial groups are lost during 18 metamorphosis. Several bacterial groups were found in both adults and larvae suggesting that they are 19 transmitted across developmental stages. Reads corresponding to several known entomopathogenic 20 bacterial clades as well as the non-bacterial entomopathogen, Metarhizium rileyi (Farl.) Kepler, Rehner & 21 Humber (2014), were observed. Mitochondrial DNA haplotyping of the S. frugiperda population in Kenya 22 indicated the presence of both 'Rice' and 'Corn' strains, with a higher prevalence of the 'Rice' strain. Insights 23 into the microbiota may ultimately provide alternative avenues for controlling of this pest.24