Abstract. The protease-resistant infectious prion protein, PrP res , that causes transmissible spongiform encephalopathies, is remarkably resistant to conventional physical and chemical sterilization methods, including heat. It was hypothesized that thermal-dependent PrP res degradation has been underestimated, and the effect of prolonged incubation at 37uC, 55uC, and 80uC on PrP res detection was examined using brain homogenates from chronic wasting disease-affected elk and mule deer (PrP CWD ). Immunoblotting demonstrated progressive loss of PrP CWD immunoreactivity with time in all incubated samples as temperature increased, and PrP CWD was virtually undetectable after 90 days of incubation at 55uC and 80uC. These results indicate that decontamination methods and tissue disposal systems maintaining elevated temperatures for long periods of time could interfere with immunodetection, and the reliability of assays for PrP res detection could be compromised when applied to tissues exposed to heat with time. Although these results may suggest that such prolonged heat treatment could destroy prions, the observed loss of immunoreactivity does not necessarily correlate with a concurrent loss of infectivity. Bioassay is needed to determine if samples that have been incubated under these conditions retain infectivity.