This research aims to identify and analyze the various factors affecting construction labor productivity covering the period from December 9, 2020 - January 31, 2021, a year after it was declared Covid-19 a pandemic. Due to the pandemic effect, the local government units in four selected study areas imposed intermittent Enhance Community Quarantine on all places to control the Coronavirus spread in compliance with the health department protocol. Fifty-five questionnaires returned out of 63 distributed are tabulated according to each group-related factor. The correlation analysis resulted in the highest coefficient value of 0.89 between the CTDEO and contractor groups. Meaning, most respondents have the same perception of the factors affecting construction's low labor productivity. Besides, results depicted that the absence of health workers on the construction site ranked 1st in the health & safety provision factor group with an RII of 0.97, followed by no safety engineers on the construction project sites with an RII of 0.93. From all the seven groups of factors, the health and safety group-related factors ranked 1st with an RII of 0.81, next, the schedule compression group with an RII of 0.78. Hypothesis testing asserted that working six days per week was one of the significant factors affecting labor productivity on the contractor's side, suggested by more than 50% of the respondents. The workforce group-related factors with an RII of 0.77 demonstrated a slight difference with the schedule compression group-related factors. Thus, the Covid-19 pandemic has a significant effect on the essential factors affecting construction's low labor productivity.