This study analyses and presents a technical comparison of seepage estimation from 11 empirical equations with measured seepage losses by the inflow-outflow method from two lined and unlined secondary irrigation canals sub-divided into different reach lengths. A significant margin of error was observed between empirical and inflowoutflow methods, hence modifications in empirical equations were performed. Results reveal that the average seepage losses observed in unlined and lined canals by inflow-outflow method were 9.15 and 3.89%, respectively. Moreover, only the Chinese equation estimated seepage losses for an unlined canal as similar to observed losses (0.11 m 3 •s -1 ) whereas the Indian equation estimated similar results for a lined canal to those observed in the field (0.09 m 3 •s -1 ). However, the rest of empirical equations were modified in accordance with error percentage with regard to the observed losses. The empirical equations were then observed to estimate reliable results of seepage.