Cytoplasmic protein in hepatocytes is sequestered and degraded by two general classes of lysosomes, overt autophagic vacuoles (macroautophagy) and dense bodies (microautophagy). Volumes of the apparent space in each class that contain the internalized protein, together with estimates of cytoplasmic protein concentration, were used as a basis for predicting rates of protein degradation by the lysosomal system in livers of fed, 48-hr starved, and starved-refed mice. Assuming that the turnover of all sequestered protein is equal to that previously determined in overt autophagic vacuoles (0.087 min'), we obtained close agreement between predicted and observed rates in the three conditions studied. The two autophagic components, though, exhibited different patterns of regulation. Microautophagy followed a downward course through starvation and into refeeding, a trend that explained fully the fall in absolute rates of protein degradation during starvation. By contrast, macroautophagy remained constant throughout starvation but was virtually abolished with refeeding. Whereas regulation of the latter can be explained largely by immediate responses to the supply of amino acids, present evidence together with results of others indicate that microsequestration could be linked to functional and quantitative alterations in the smooth endoplasmic reticulum. Both types of regulation contributed equally to the marked suppression of proteolysis during cytoplasmic regrowth.Protein and other cytoplasmic constituents in hepatocytes are internalized within the lysosomal system in two general ways: (i) by the formation of overt autophagic vacuoles, a highly visible mechanism involving the sequestration of organelles within smooth-surfaced membranes (1)(2)(3)(4)(5), and (ii) by the engulfment of small bits of cytoplasm that subsequently appear in dense bodies (1, 3-5), a microautophagic process that we believe accounts for basal protein turnover (5). Although both are ongoing functions, we have shown in perfused livers of fed animals that the addition or deletion of amino acids can regulate overt autophagy rapidly over a wide range without appreciably affecting microautophagy (3, 5). On the other hand, the induction of cytoplasmic growth, such as that produced by starvation and refeeding, is associated with decreases in rates of protein breakdown (6, 7) and sequestered protein (7) to levels that can be explained only by the suppression of both autophagic functions. Nothing is presently known, however, of the way microinternalization is regulated.The present investigation is an attempt to quantify by stereologic methods the contributions of each process to protein breakdown in livers of fed, starved, and starved-refed mice and to compare degradation rates predicted by this approach with experimentally determined rates. Close agreement was found under all conditions, although activities of the individual autophagic components were affected in distinctly independent ways. Rates of overt autophagy were interpretable from the gene...