“…The high resolving power (>150,000) and excellent mass accuracy (specified as $2-5 ppm, but demonstrated to be as low as 0.2 ppm under favorable conditions) (Makarov et al, 2006a,b), significantly reduce false positive peptide identifications in bottom-up protein analyses (Adachi et al, 2006;Charneau et al, 2007;Dave et al, 2007;de Souza, Godoy, & Mann, 2006;Forner, Arriaga, & Mann, 2006;Graumann et al, 2008;Hanke et al, 2008;Hoopmann, Finney, & MacCoss, 2007;Kamphorst et al, 2007;Li et al, 2007b;Lu et al, 2007Lu et al, , 2008Manes et al, 2008;Mayampurath et al, 2008;Park et al, 2008;Scherl et al, 2008;Scigelova & Makarov, 2006;Shi et al, 2007;Swatkoski et al, 2007Swatkoski et al, , 2008Thevis et al, 2007b;Usaite et al, 2008;Venable et al, 2007;Wilson-Grady, Villén, & Gygi, 2008;Wisniewski et al, 2007;Zougman et al, 2008), and improve the accuracy of de novo interpretations of MS/MS spectra (DiMaggio et al, 2008;Ford et al, 2008;Frank et al, 2007;Scigelova & Makarov, 2006;Yates et al, 2006). The LTQOrbitrap has also been used to analyze intact small (3-10 kDa) (Bredehöft, Schänzer, & Thevis, 2008;Thevis et al, 2006a;Thevis, Thomas, & Schänzer, 2008b), medium (10-25 kDa) (Macek et al, 2006;…”