In this study, the microbiological quality of fresh rainwater was assessed from 50 rain events under tropical weather conditions for a year. The levels of four major opportunistic waterborne pathogens, namely, Escherichia coli, Klebsiella pneumoniae, Pseudomonas aeruginosa, and Aeromonas hydrophila, in rainwater samples were quantified by using a robust and sensitive quantitative PCR (qPCR) method. Of the 50 rainwater samples, 25 were found to be positive for at least one pathogen: 21 for E. coli, 16 for P. aeruginosa, 6 for K. pneumoniae, and 1 for A. hydrophila. In addition to the microbiological assessment of rainwater samples, we also studied the influence of prevailing air quality on the microbial quality of rainwater over the sampling period. A significant change in the diversity and relative abundance of the basic microbial indicator organisms in rainwater was observed during a major regional air pollution episode in Southeast Asia due to biomass-burning emissions.
Water shortage is becoming a major problem worldwide due to the increased demands of growing population and urbanization (29,38). In an effort to ensure a sustainable future, a global search for alternative sources of water is ongoing, and rainwater harvesting has received considerable attention (1,13,23,44,45). However, the use of rainwater for drinking purposes is impeded by issues of water quality in terms of chemical and microbiological contamination and its potential health risks (1). While numerous studies on the chemical contamination of rainwater have been conducted (5,11,27,30,43), its microbial quality remains relatively unknown due to the analytical challenge involved in the detection of a range of contaminants, particularly pathogens.Some previous studies have reported that roof-harvested rainwater is generally acceptable for drinking and household purposes (12,13,16,26), while more-recent studies have revealed the presence of waterborne pathogens in rainwater samples (1,3,11,22,34,35,43). Differences in the characteristics of the catchment area, the type of water tanks, their cleanliness, and other factors, such as roof material, the intensity of human activities in the catchment area (urban or rural), and the presence of insects and birds on the rooftop, could be responsible for the contradictory results in the literature on the microbial quality of rainwater (10,17,18,34,39,46). Numerous studies conducted on the chemical composition of rainwater and roof runoff have demonstrated links between chemical contaminants and weather patterns, and between atmospheric transport and deposition (9,19,24,48). However, little is known about such links with respect to microbial composition. In order to identify sources of microorganisms in roof-harvested rainwater, it is desirable to study the microbial flora of fresh rainwater prior to its collection and storage, with no contamination from external sources.Microbial water quality monitoring is generally directed toward indicator microorganisms such as coliforms, Escherichia coli, and Klebsiel...