Sequence analysis of duck hepatitis virus type 1 (DHV-1) led to its classification as the only member of a new genus, Avihepatovirus, of the family Picornaviridae, and so was renamed duck hepatitis A virus (DHAV). The 5= untranslated region (5= UTR) plays an important role in translation initiation and RNA synthesis of the picornavirus. Here, we provide evidence that the 651-nucleotide (nt)-long 5= UTR of DHAV genome contains an internal ribosome entry site (IRES) element that functions efficiently in vitro and within BHK cells. Comparative sequence analysis showed that the 3= part of the DHAV 5= UTR is similar to the porcine teschovirus 1 (PTV-1) IRES in sequence and predicted secondary structure. Further mutational analyses of the predicted domain IIId, domain IIIe, and pseudoknot structure at the 3= end of the DHAV IRES support our predicted secondary structure. However, unlike the case for the PTV-1 IRES element, analysis of various deletion mutants demonstrated that the optimally functional DHAV IRES element with a size of approximately 420 nt is larger than that of PTV-1 and contains other peripheral domains (Id and Ie) that do not exist within the type IV IRES elements. The domain Ie, however, could be removed without significant loss of activity. Surprisingly, like the hepatitis A virus (HAV) IRES element, the activity of DHAV IRES could be eliminated by expression of enterovirus 2A protease. These findings indicate that the DHAV IRES shares common features with type IV picornavirus IRES elements, whereas it exhibits significant differences from type IV IRESs. Therefore, we propose that DHAV possesses a distinct type IV IRES element of picornavirus.T he internal ribosome entry site (IRES) elements have the function to direct cap-independent internal initiation of protein synthesis, which is mechanistically quite different from the canonical cap-dependent mechanism for the translation initiation of the majority of cellular mRNAs (3). Earlier studies have indicated that all cytoplasmic cellular mRNAs possess a 5= terminal cap structure (m7GpppG. . .) that is recognized by the translation initiation factor complex-eukaryotic initiation factor 4 (eIF4F), which contains three proteins including eIF4E (cap-binding protein); eIF4A (ATP-dependent RNA helicase); and eIF4G, which acts as a protein scaffold. This complex of proteins acts as a bridge between the mRNA and the 40S ribosomal subunit via its interaction with eIF3 by multiple protein-protein interactions (23). In contrast to the cellular mRNAs, no cap structure exists at the 5= terminus of some viral mRNAs, such as those of picornaviruses and relevant viruses like hepatitis C virus (HCV). Initiation of protein synthesis for these viruses which rely on cap structure is termed internal initiation; in this case, the IRES element located within the 5= untranslated region (5= UTR) of the viral genome can exert the function to direct translation initiation (4, 19). Previous studies have showed that these IRES elements contain diverse secondary structures with ...