The pine wood nematode (PWN;
Bursaphelenchus xylophilus
) is the causal agent of pine wilt disease, which results in severe ecological and economic losses in coniferous forests. During overwintering, PWNs undergo morphological and physiological changes to adapt to low temperature environments. Here, the physiological changes of the PWN populations sampled in the summer and winter were compared to analyze the role of low temperatures in their response. The PWN overwinters as third-stage dispersal juveniles, which showed significantly greater survival rates than summer populations (propagative forms) at sub-zero temperatures. The major biochemical compounds in the populations were analyzed by gas chromatography. Eight dominant fatty acids, with stearic acid being the most important, were identified from PWN propagative stage and third-stage dispersal stage. Compared with the propagative stage, the dispersal stage showed significant increases in the fatty acid content and the proportion of unsaturated fatty acids. Three carbohydrates, trehalose, glycerol and glucose, were detected in the PWN. Compared with the summer population, the levels of trehalose and glycerol increased significantly, while glucose decreased, in the winter population. The modifications in fatty acid composition and cryoprotectant levels, as elements of its changing physiology, play important roles in the overwintering success of the PWN.