In most developing countries, <i>Dientamoeba fragilis</i> infection is an obscure protozoan infection. We aimed to determine a frequency and clinical importance of <i>D. fragilis</i> infection in Taif, Saudi Arabia. A 1-year case control study included patients with gastrointestinal (cases, n=114) or non-gastrointestinal symptoms (controls, n=90). The fecal samples were examined with the classical parasitological methods for intestinal protozoa, and by real time PCR for <i>D. fragilis</i>. The infection by <i>D. fragilis</i> was detected in 5.8% by PCR and in 4.4% patients by microscopy. The infection was identified more in control group (n=9) than in cases (n=3); a sole infection in 11 patients and mixed with <i>Giardia</i> in 1 patient. The other enteric parasites detected were <i>Blastocystis</i> sp. (8.3%), <i>Giardia</i> sp. (5.3%), <i>Cryptosporidium</i> sp. (2.9%), <i>Entamoeba histolytica</i> (1.4%), <i>Entamoeba coli</i> (0.9%) and <i>Hymenolepis nana</i> (0.4%). Our results tend to reinforce the need to increase awareness of <i>D. fragilis</i> infection in Saudi Arabia.