Changes in chromatin structure were induced in human peripheral blood lymphocytes. Resting GO/G1 cells were exposed to either X-rays, mitomycin C, or bleomycin and stimulated with PHA. Exposure to such agents provokes an increase in the non-cycling cell fraction; and a distinctive, non-cycling G-/Gl subpopulation appears which is characterized by a 23% reduced Hoechst fluorescence intensity. This novel subpopulation was found as early as 24 h after PHA stimulation; it was still present in 72 h cultures. Bromodeoxyuridine (BrdUrd/ Hoechst 33258-ethidium bromide (EB) flow cytometric analysis revealed increments of this subpopulation from 2% of the non-cycling cell fraction in the control culture to 29% (X-rays), 15% (mitomycin C), and 24% (bleomycin) after clastogen exposure. In the presence of the ligase inhibitor 3-aminobenzamide, this aberrant cell population increased significantly after X-ray treatment. With the aid of a viable BrdUrd/Hoechst staining assay, the newly identified non-cycling subpopulation with decreased Hoechst 33258 binding was identified as a distinctive signal cluster. Other than the regular non-cycling and cycling cell fractions, this subpopulation with non-stoichiometric Hoechst dye binding showed progressive uptake of ethidium bromide; however, by such criteria 44% of the subpopulation was still viable, It is concluded that the clastogen induced subpopulation of noncycling cells represents damaged cells with altered dye binding properties.Key terms: BrdUrdlHoechst, flow cytometry, viable cell staining, chromatin conformation, cell cycle, X-rays, 3-aminobenzamide, bleomycin, mitomycin, apoptosis Changes in chromatin conformation occur naturally during cell activation, cell cycle progression (5,7,12, 18,32), and cell differentiation (8,9,34); in addition such changes can be induced by single-and/or doublestrand breaks in DNA (22,24,27,34). A variety of molecular of biochemical techniques exist for the determination and quantification of changes in chromatin conformation. The flow cytometric assessment of differences in chromatin condensation and of DNA damage via differential f luorochrome binding has become an informative tool for the analysis of such damage a t the single-cell level (7)(8)(9)28,32). In heterogeneous cell populations such alterations might be recognized by the occurrence of distinct subpopulations which display non-stoichiometric dye binding (7,12,18). Most of the flow cytometric approaches, however, use stringent cytochemical techniques, and information about subpopulations and cell viability is lost.During the routine application of high resolution BrdUrdIHoechst-EB (bromodeoxyuridineiHoechst 33342-ethidium bromide) flow cytometric cell cycle analysis of intact cells (13)(14)(15)(16)(17)23,25,26,29), changes of chromatin condensation as indicated by non-stoichiometric fluorochrome binding are rarely observed. However, following treatment of peripheral blood lymphocytes with DNA-damaging agents, a complex pattern of cell kinetic changes and the concomitant appearance of ...