Aims/hypothesis We aimed to examine whether sex differences in fasting plasma glucose (FPG), 2 h post-OGTT plasma glucose (2hPG) and HbA 1c could be explained by differences in body size and/or body composition between men and women in a general non-diabetic Danish population. Moreover, we aimed to study to what degree the newly suggested high-risk HbA 1c criteria overlapped with the current OGTT-based criteria of glucose intolerance. Methods We used cross-sectional data from 6,006 nondiabetic men and women. HbA 1c and FPG levels were measured and a 75 g OGTT was performed in all individuals. Height, weight and waist and hip circumferences were measured and BMI was calculated. Data were analysed in age-adjusted linear regression models. Results Men had higher FPG and HbA 1c levels than women, and women had higher 2hPG levels than men. Sex differences in 2hPG levels were explained by differences in height and FPG levels, but sex differences in FPG or HbA 1c levels were not explained by anthropometric measures. Among individuals with HbA 1c in the high-risk range (6.0-6.5%), 73% had normal glucose tolerance. Conclusions/interpretation Sex differences in 2hPG levels after an OGTT may to some extent be a consequence of giving the same amount of glucose to individuals with different body size. In contrast, sex differences in FPG and HbA 1c levels are likely to have a true physiological basis. In clinical practice, the HbA 1c assay may be more convenient than the OGTT, but it is important to note that different populations are identified by the two methods.Trial registration ClinicalTrials.gov NCT00289237