Methionine synthase (MS), a cobalamin-dependent enzyme, transfers a methyl group from methyltetrahydrofolate to homocysteine to form methionine and tetrahydrofolate (Scheme 1). Human MS comprises four discrete functional modules, which bind, from the N to C terminus, respectively, homocysteine, methyltetrahydrofolate, cobalamin, and S-adenosylmethionine (SAM). The C-terminal "activation domain" (AD) also interacts with methionine synthase reductase (MSR), which is an NADPH-dependent diflavin oxidoreductase containing 1 mol equivalent of FAD and FMN.[1] Occasionally, MS becomes inactivated through oxidation of cob(I)alamin to cob(II)alamin and reactivation by electron transfer from MSR is required.[2] Direct reduction of MS by NADPH via FAD and FMN is thermodynamically not feasible because the redox potential of cob(I/II)alamin is far more negative than that of NADP + .[1] Consequently, Nature traps the small amounts of cob(I)alamin in equilibrium with cob(II)alamin by irreversible methylation with SAM (Scheme 1). The inferred multidomain structure of MSR and the presence of a large linker between the component flavin-containing domains suggests a large degree of conformational flexibility in the protein.[3] By analogy with other diflavin oxidoreductases related to MSR, such as nitric oxide synthase [4] and cytochrome P450 reductase, [5][6][7] it has been suggested that MSR fluctuates between "closed" and "open" conformations. In this simple model, one conformation ("open" conformation) of MSR presents the FMN domain so that it is available for interaction with the AD of MS; in another conformation (a "closed" conformation) the FMN domain is in close proximity to the NADPH/FAD-binding domain, where it facilitates interflavin electron transfer (Figure 1).[1] Although this model has not been tested explicitly, these multiple conformations would optimise electronic coupling to the FAD domain (closed conformation) and cob(II)alamin (open conformation) and require a "swinging" motion for the FMN domain between the two states. Such motion would, therefore, define an energy landscape for the conformationally flexible MSR protein (Figure 1).In general, the exploration of energy landscapes is integral to conformational sampling mechanisms for many biological Scheme 1. The catalytic and reactivation cycles of MS. During the primary catalytic cycle MS uses enzyme-bound cob(I)alamin to abstract a methyl group from methyl tetrahydrofolate to generate tetrahydrofolate and methylcob(III)alamin. Regeneration of inactivated MS requires one electron derived from NADPH-dependent MSR and methyl transfer from SAM; SAM: S-adenosylmethionine; SAH: S-adenosylhomocysteine. [a] Dr.