BACKGROUND: Estrogen receptor (ER) and peroxisome proliferator-activated receptor gamma (PPARg) are associated with thyroid tumorigenesis and treatment. However, the interaction between them has not been studied. METHODS: The impact of ER overexpression or down-expression by DNA/small interfering RNA (siRNA) transfection, ERa agonists, and the ERb agonist diarylpropiolnitrile (DPN) on PPARg expression/activity was examined in papillary thyroid carcinoma (PTC) and anaplastic thyroid carcinoma (ATC) cells. The effects of PPARg modulation by rosiglitazone (RTZ), a PPARg ligand, and of PPARg siRNA on ER expression were determined. Cellular functions reflected by cell proliferation and migration were assayed. Apoptosis was analyzed by terminal deoxynucleotidyl transferase dUTP nick-end labeling, and apoptotic-related proteins were evaluated by Western blot analysis. RESULTS: PPARg protein and activity were reduced by the over-expression of either ERa or ERb, whereas repression of ERa or ERb increased PPARg expression. The administration of RTZ counteracted the effects of ER and also reduced their expression, particularly in PTC cells. Moreover, knockdown of PPARg increased ER expression and activity. Functionally, ERa activation offset the inhibitory effect of PPARg on cellular functions, but ERb activation aggregated it and induced apoptosis, particularly in PTC cells. Finally, the interaction between ERb and PPARg enhanced the expression of proapoptotic molecules, such as caspase-3 and apoptosis-inducing factor. CONCLUSIONS: This study provides evidence supporting a cross-talk between ER and PPARg. The reciprocal interaction between PPARg and ERb significantly inhibits the proliferation and migration of thyroid cancer cells, providing a new therapeutic strategy against thyroid cancer. Cancer 2014;120:142-53.