Differentially expressed gene transcripts in roots of resistant and susceptible chickpea plant (Cicer arietinum L.) upon Fusarium oxysporum infection

Nimbalkar, Suhas; Harsulkar, Abhay; Giri, Ashok P.; Sainani, Mohini N.; Franceschi, Vincent R.; Gupta, Vidya S.

doi:10.1016/j.pmpp.2006.10.003

Cited by 45 publications

(29 citation statements)

References 71 publications

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“…Transcription changes after root infection of a resistant and susceptible genotype using a cDNA-amplified fragment length polymorphism approach uncovered 19 differentially expressed sequences, potentially involved in a defence response. Notably, many were similar to previously characterised defencerelated proteins, including two transcription factors and three nucleotide binding site-leucine rich repeat-type gene sequences (Nimbalkar et al 2006). The use of existing and further developed EST libraries and microarrays will aid in a fuller characterisation of the mechanisms involved in the Fusarium wilt defence response.…”

Section: Expressed Sequence Tags and Transcriptomicssupporting

confidence: 52%

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Functional genomics in chickpea: an emerging frontier for molecular-assisted breeding

Coram

Mantri

Ford

et al. 2007

Functional Plant Biol.

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Abstract. Chickpea is a valuable and important agricultural crop, but yield potential is limited by a series of biotic and abiotic stresses, including Ascochyta blight, Fusarium wilt, drought, cold and salinity. To accelerate molecular breeding efforts for the discovery and introgression of stress tolerance genes into cultivated chickpea, functional genomics approaches are rapidly growing. Recently a series of genetic tools for chickpea have become available that have allowed high-powered functional genomics studies to proceed, including a dense genetic map, large insert genome libraries, expressed sequence tag libraries, microarrays, serial analysis of gene expression, transgenics and reverse genetics. This review summarises the development of these genomic tools and the achievements made in initial and emerging functional genomics studies. Much of the initial research focused on Ascochyta blight resistance, and a resistance model has been synthesised based on the results of various studies. Use of the rich comparative genomics resources from the model legumes Medicago truncatula and Lotus japonicus is also discussed. Finally, perspectives on the future directions for chickpea functional genomics, with the goal of developing elite chickpea cultivars, are discussed.

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Section: Expressed Sequence Tags and Transcriptomicssupporting

confidence: 52%

“…Although not definitive, the model forms a basis for further validation studies. Nimbalkar et al (2006) used a transcriptomics approach for characterisation of the molecular interactions between chickpea and race 1 of Fusarium oxysporum f. sp. ciceris.…”

Section: Expressed Sequence Tags and Transcriptomicsmentioning

confidence: 99%

Functional genomics in chickpea: an emerging frontier for molecular-assisted breeding

Coram

Mantri

Ford

et al. 2007

Functional Plant Biol.

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“…The expression of ribulose-1,5-bisphosphate carboxylase/oxygenase was induced in response to wheat infection with powdery mildew (Zheng et al 2009). Retroelements appeared to be differentially expressed during the chickpea reaction to Fusarium oxysporum infection (Nimbalkar et al 2006). Although plant retrotransposons have been found to be activated by abiotic and biotic stresses, their presence may be a mere evidence of the amplification of abundant RNA fragments by cDNA-AFLP method while some minor specific involved gene transcripts could be missed (Reijans et al 2003).…”

Section: Sequence Analysismentioning

confidence: 97%

“…No significant hits were detected for seven clones. Though their function is unknown, they still may represent novel transcripts associated with defence response (Nimbalkar et al 2006). No clones were recognized as fungal genes based on their homology to known fungal gene sequences.…”

Section: Sequence Analysismentioning

confidence: 99%

“…It enables to isolate genes that are differentially expressed during a process of interest. It was employed to clone cDNA copies of transcripts that are upregulated during P. teres conidial germination (Dilger et al 2003) to describe interactions between the fungal pathogen C. sativus and its resistant barley host (Al-Daoude & Jawhar 2009) and to identify differentially expressed genes in chickpea during root infection by Fusarium oxysporum (Nimbalkar et al 2006). Adhikari et al (2007) analysed the expression patterns in association with resistance response of wheat to Mycosphaerella graminicola using cDNA-AFLP.…”

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Differentially expressed gene transcripts in wheat and barley leaves upon leaf spot infection

Dumalasová¹,

Svobodová²,

Hanzalová³

2012

CZECH J GENET PLANT

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A cDNA library was created on the basis of transcripts that were generated during the process of infection of wheat and barley with Pyrenophora tritici-repentis or P. teres. Due to the time course of infection assays, the leaves were collected at various intervals after inoculation until 100 h after inoculation. We compared the temporal development of the two pathogens, as well as the effect of varieties of the same crop species, and differences among isolates of a single pathogen. The appressoria and vesicular structures developed more rapidly in barley varieties inoculated by P. teres than in wheat varieties inoculated by P. tritici-repentis. The lower level of susceptibility of the wheat variety Globus and the barley variety Heris to P. tritici-repentis and P. teres, respectively, was apparent from 12 h after infection. Information on changes in expression profiles during pathogenesis and on the clones that could be functionally assigned to the known gene sequences is presented. Out of the 360 transcript derived fragments (TDFs) produced in the barley-P. teres pathosystem in our trials, 62% were specific to the plant-pathogen interaction. In the wheat-P. tritici-repentis pathosystem 291 TDFs occurred, 63% were specific to the plant-pathogen interaction.

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Molecular Mechanism Underlying Chickpea – Fusarium oxysporum f. sp. ciceri Interaction

Suthar

Rajkumar

Parmar

et al. 2021

Sustainable Agriculture Reviews

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Differentially expressed gene transcripts in roots of resistant and susceptible chickpea plant (Cicer arietinum L.) upon Fusarium oxysporum infection

Cited by 45 publications

References 71 publications

Functional genomics in chickpea: an emerging frontier for molecular-assisted breeding

Functional genomics in chickpea: an emerging frontier for molecular-assisted breeding

Differentially expressed gene transcripts in wheat and barley leaves upon leaf spot infection

Molecular Mechanism Underlying Chickpea – Fusarium oxysporum f. sp. ciceri Interaction

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