Previous studies indicate that the microstructure of individual white matter (WM) tracts is related to cognitive function. More recent studies indicate that the microstructure of individual tracts is highly correlated and that a property common across WM is related to overall cognitive function in adults. However, little is known about whether these common WM properties exist in early childhood development or how they are related to cognitive development. In this study, we used diffusion tensor imaging (DTI) to investigate common underlying factors in 12 fiber tracts, their relationship with cognitive function, and their heritability in a longitudinal sample of healthy children at birth (n = 535), 1 y (n = 322), and 2 y (n = 244) of age. Our data show that, in neonates, there is a highly significant correlation between major WM tracts that decreases from birth to 2 y of age. Over the same period, the factor structure increases in complexity, from one factor at birth to three factors at age 2 y, which explain 50% of variance. The identified common factors of DTI metrics in each age group are significantly correlated with general cognitive scores and predict cognitive ability in later childhood. These factors are moderately heritable. These findings illustrate the anatomical differentiation of WM fiber from birth to 2 y of age that correlate with cognitive development. Our results also suggest that the common factor approach is an informative way to study WM development and its relationship with cognition and is a useful approach for future imaging genetic studies.factor analysis | white matter | DTI | cognition | heritability I ndividual differences in white matter (WM) microstructure have been shown to be related to cognitive functions in adults (1, 2) and children (3-5). Diffusion tensor imaging (DTI) parameters in different WM regions or tracts are variably associated with processing speed, general intelligence, and higher-order cognitive abilities (1-5).To date, the majority of DTI studies of WM microstructure have analyzed each tract or WM region independently. However, more recent studies clearly demonstrate that fractional anisotropy (FA) and other DTI metrics of WM microstructure correlate highly across WM tracts and across a wide age range, including neonates, older children, and adults (6-8). Furthermore, studies indicate that a general factor derived by principal component analyses (PCA) describing common variance in FA across WM tracts is associated with information processing speed (9) as well as general intelligence (10), at least in older adults. In children ages 8 to 16 y, three principal components of FA have been identified; the one corresponding to the corpus callosum was significantly related to IQ (11).The identification of one or more common WM factors that influence variation in multiple WM tracts or regions is important for several reasons. Such factors could prove to be a good target for imaging genetic studies, as one would expect genetic variants influencing WM development and function ...