Self-assembled DNA delivery systems based on anionic lipids (ALs) complexed with DNA mediated by divalent cations have been recently introduced as an alternative to cationic lipid-DNA complexes because of their low cytotoxicity. We investigate AL-DNA complexes induced by different cations by using synchrotron small angle x-ray scattering and confocal microscopy to show how different ion-mediated interactions are expressed in the selfassembled structures and phase behavior of AL-DNA complexes. The governing interactions in AL-DNA systems are complex: divalent ions can mediate strong attractions between different combinations of the components (such as DNA-DNA and membrane-membrane). Moreover, divalent cations can coordinate nonelectrostatically with lipids and modify the resultant membrane structure. We find that at low membrane charge densities AL-DNA complexes organize into a lamellar structure of alternating DNA and membrane layers crosslinked by ions. At high membrane charge densities, a new phase with no analog in cationic lipid-DNA systems is observed: DNA is expelled from the complex, and a lamellar stack of membranes and intercalated ions is formed. For a subset of the ionic species, high ion concentrations generate an inverted hexagonal phase comprised of DNA strands wrapped by ion-coated lipid tubes. A simple theoretical model that takes into account the electrostatic and membrane elastic contributions to the free energy shows that this transition is consistent with an ion-induced change in the membrane spontaneous curvature, c 0. Moreover, the crossover between the lamellar and inverted hexagonal phases occurs at a critical c0 that agrees well with experimental values.colloids ͉ like-charge attraction ͉ membrane ͉ self-assembly ͉ x-ray G ene therapy using either viral or synthetic vectors is currently one of the most promising strategies for developing cures for many hereditary and acquired diseases. Protocols have been approved for cancer, hemophilia, cystic fibrosis, neuromuscular disorders, and others (1). Although synthetic nonviral systems such as cationic liposomes generally transfect less efficiently than viruses, they have a number of advantages, such as high DNA packaging capacity and low immunogenicity. Cationic lipid (CL)-DNA complexes have emerged as one of the major nonviral DNA delivery platforms (1-7) and have been used to transfect a broad range of cell types and to deliver to cancer vaccines (8-10).Anionic lipids (ALs) occur naturally in eukaryotic cell membranes, and DNA delivery systems based on ALs have recently been examined as an alternative to CLs because of their low cytotoxicity (11-13). ALs can be complexed with anionic DNA via interaction with multivalent cations such as Ca 2ϩ and have been shown to successfully transfer oligonucleotides. An outstanding problem of this approach is the inefficient association between the ALs and DNA molecules, which is attributed to their like-charge electrostatic repulsion.Rational design of AL-DNA vectors requires a coherent understanding of...