Background:
Today, acute lymphoblastic leukemia is one of the most common malignant diseases of the hematopoietic system. The genetic predisposition to ALL is not fully explored in various ethnic populations.
Objective:
The study aimed to conduct a comparative analysis of the population frequencies of alleles and genotypes of polymorphic gene variants: immune regulation
GATA3 (rs3824662)
; transcription and differentiation of B cells:
ARID5B (rs7089424, rs10740055),
IKZF1 (rs4132601)
; differentiation of hematopoietic cells:
PIP4K2A
(rs7088318)
; apoptosis:
CEBPE (rs2239633)
, tumor suppressors:
CDKN2A (rs3731249)
,
TP53 (rs1042522)
; carcinogen metabolism:
CBR3
(rs1056892), CYP1A1
(rs104894, rs4646903), according to genome-wide association studies analyses associated with the risk of developing pediatric beta-cell acute lymphoblastic leukemia (B-cell ALL), in an ethnically homogeneous population of Kazakhs with studied populations.
Methods:
The genomic database consists of 1800 conditionally healthy persons of Kazakh nationality, genotyped using OmniChip 2.5-8 Illumina chips at the deCODE genetics as part of the InterPregGen 7 project of the European Union (EU) framework program under Grant Agreement No. 282540.
Results:
High population frequencies of single nucleotide polymorphism (SNP) minor alleles identified for immune regulation genes –
GATA3 rs3824662
– 42.5%; transcription and differentiation of B-cells genes –
ARID5B rs7089424
– 33.1% and rs10740055 – 48.5%, which suggests their significant genetic contribution to the risk of development and prognosis of the effectiveness of B-cell ALL therapy in the Kazakh population. The significantly lower population frequency of the minor allele G rs1056892
CBR3
gene – 38.6% in the Kazakhs suggests its significant protective effect in reducing the risk of childhood B-cell ALL and the smaller number of cardiac complications after anthracycline therapy.
Conclusion:
The obtained results will serve as a basis for developing effective methods for predicting the risk of development, early diagnosis, and effectiveness of treatment of B-cell ALL in children.