Introduction
Carbapenem-resistant
Klebsiella pneumoniae
(CRKP) has been widespread in coastal cities of eastern China since 2009. However, how CRKP spreads and evolves in southwest China is unclear.
Aim
We investigated the genetic characteristics and dissemination mechanisms of carbapenemase genes in forty-one non-repetitive CRKP isolates collected from a southwest hospital, Kunming, Yunnan, during 2010–2013.
Methodology
Drug susceptibilities were analyzed by using VITEK 2 compact system. Genetic relationships were ascertained based on multilocus sequence typing (MLST) and Pulsed-field gel electrophoresis (PFGE) analysis. Genetic backgrounds of
bla
KPC-2
and
bla
NDM-1
were revealed by DNA walking and high-throughput sequencing.
Results
All isolates were highly resistant to common antibiotics except for tigecycline. In total, 34
bla
KPC-2
, 3
bla
NDM-1
, 1
bla
IMP-4
and 3
bla
IMP-26
genes were identified and KP67 plasmid 1 co-harbored
bla
NDM-1
and
bla
IMP-26
. Five sequence types, namely ST11, ST290, ST340, ST395 and ST437, were recognized by MLST. Surprisingly,
bla
KPC-2
was only detected in ST11 strains. We described a clonal dissemination of
fosA3
-positive IncR-IncF33:A-:B- multireplicon plasmid carrying the gene cassettes IS
26
-ΔTn
3
-IS
Kpn27-bla
KPC-2
-ΔIS
Kpn6-korC-klcA
-Δ
repB
-Tn
1721
in all ST11 isolates. Three
bla
NDM-1
positive isolates belonged to three different ST types and their
bla
NDM-1
genetic backgrounds were also distinct. Interestingly, the flanking regions of
bla
NDM-1
in KP67 and KP72 were duplicated into one to five copies in a form of tandem repeat by the transposition of IS
91
like element. The
bla
NDM-1
of KP82 was carried on a common IncX3 plasmid.
Conclusion
This study described the early epidemiological characteristics of
bla
KPC-2
/
bla
NDM-1
-carrying CRKP, and reported a new tandem repeat pattern of
bla
NDM-1
cluster in Yunnan. These findings extend our knowledge on the carbapenemase gene evolutions.