Agricultural activities influence soil processes and can shape the chemistry of underground water. The quality of underground water depends on the circulation of geochemical and biological materials, soil properties, mobility of elements, biological sorption, and can be modified by anthropogenic activity [Aiken, 1985; Pisarek and Głowacki, 2005; Steinberg et al., 2003]. The balance of nutrients in the soils in rural areas is very unstable, due to difficulties in adjusting their amounts to the actual needs of plants and overproduction of organic fertilizers. As a result, a large part of nutrients move beyond the reach of the root system, is leached from the soil profiles and can infiltrate to the aquatic system. The content of organic carbon has also significant effects on water quality. Especially humic substances play an important role in the aquatic system. In the freshwater approximately 90% of total organic matter occurs as dissolved forms [Górniak, 1996;