Chem. 278, 31067-31077). In this model, a rare genomic event leads to the formation of the founder vertebrate fibrillar collagen gene prior to the early vertebrate genome duplications and the radiation of the vertebrate fibrillar collagen clades (A, B, and C). Here, we present the modular structure of the fibrillar collagen chains present in different invertebrates from the protostome Anopheles gambiae to the chordate Ciona intestinalis. From their modular structure and the use of a triple helix instead of C-propeptide sequences in phylogenetic analyses, we were able to show that the divergence of A and B clades arose early during evolution because ␣ chains related to these clades are present in protostomes. Moreover, the event leading to the divergence of B and C clades from a founder gene arose before the appearance of vertebrates; altogether these data contradict the Boot-Handford model. Moreover, they indicate that all the key steps required for the formation of fibrils of variable structure and functionality arose step by step during invertebrate evolution.Fibrillar collagens are present from sponges to humans and are the primary component of striated fibrils (1, 2). A fibrillar procollagen molecule is made of three identical or different pro-␣ chains. Each pro-␣ chain contains a central triple helix made of ϳ338 Gly-Xaa-Yaa triplets flanked by non-collagenous telopeptide regions, which in turn are flanked by the N-and C-propeptides. The C-propeptide is known to contain the most conserved regions of the fibrillar ␣ chains. This domain is involved in ␣ chain recognition and in the registration of the major triple helical domain, an important step preceding elongation of the triple helix from the carboxyl to the amino terminus. In vertebrates, a short region of the C-propeptide appears to be involved in chain recognition (3). Recently, Boot-Handford and Tuckwell (4) indicated that most of this recognition sequence is absent in all invertebrate fibrillar chains characterized to date. During the extracellular maturation of procollagen molecules, the propeptides are generally removed by specific proteinases. The resultant collagen molecules participate in fibril formation.In humans, fibrillar collagens are subdivided quantitatively into major (types I-III) and minor (types V/XI) collagens. According to the collagen types incorporated into the fibrils and their ratio, the partial processing of the N-propeptide, and interactions with other extracellular matrix components, the shape and functional properties of the fibrils can vary. The importance of quantitatively minor collagens in the regulation of fibril diameter has been pointed out in several studies (5-7). From the model of Linsenmayer et al. (6), the retention of the type V N-propeptide at the surface of types I/V heterotypic fibrils is one of the key elements regulating the diameter of these fibrils.From phylogenetic studies and the exon/intron organization, it has been shown that vertebrate fibrillar collagens can be divided into two clades (8 -10): the A...