In the noisy intermediate-scale quantum (NISQ) era, one of the key questions is how to deal with the high noise level existing in physical quantum bits (qubits). Quantum error correction is promising but requires an extensive number (e.g., over 1,000) of physical qubits to create one "perfect" qubit, exceeding the capacity of the existing quantum computers. This paper aims to tackle the noise issue from another angle: instead of creating perfect qubits for general quantum algorithms, we investigate the potential to mitigate the noise issue for dedicate algorithms. Specifically, this paper targets quantum neural network (QNN), and proposes to learn the errors in the training phase, so that the identified QNN model can be resilient to noise. As a result, the implementation of QNN needs no or a small number of additional physical qubits, which is more realistic for the nearterm quantum computers. To achieve this goal, an applicationspecific compiler is essential: on the one hand, the error cannot be learned if the mapping from logical qubits to physical qubits exists randomness; on the other hand, the compiler needs to be efficient so that the lengthy training procedure can be completed in a reasonable time. In this paper, we utilize the recent QNN framework, QuantumFlow, as a case study. Experimental results show that the proposed approach can optimize QNN models for different errors in qubits, achieving up to 28% accuracy improvement compared with the model obtained by the erroragnostic training.