As an active ecological agent in the boreal forest, wildfires have many important impacts on the underlying permafrost. However, investigations of post‐fire changes in the features of ecosystem‐protected permafrost are extremely limited in the patchy permafrost regions, Northeast China. Additionally, the impacts of wildfires on patchy permafrost are complicated in this region. In this paper, based on field surveys and observations, permafrost features and their influencing factors were analyzed in the area burned in 2006. The results showed notably lower soil temperatures in shrub‐wetland (NWH1, unburned and NWH2, light burn) in comparison with those in the birch‐larch forest (NWH3, light burn and NWH4, moderate burn). Changes in shallow ground temperatures (0–4 m in depth) were significant. Mean annual soil temperatures (MAST) and annual maximum soil temperature at the light‐burn NWH2 site were 0.3–5.2°C higher than those of unburned NWH1, but annual minimum soil temperatures, 0.3–2.1°C lower. MASTs at the moderately burned NWH4 were 0.6–1.6°C higher than those at the light‐burn NWH3. The active layer thickness (ALT) was greater at burned sites, and; at the moderately burned site, only seasonal frost was found when 13 years after the burn. The contents of soil organic carbon and total nitrogen were the highest at the unburned NWH1 from 0.0 to 0.4 m in depth, followed by those at the lightly‐burned NWH2 and NWH3, and the lowest at the moderately‐burned NWH4. Climate warming, forest fires, and changing local factors (e.g., soil moisture contents, snow cover, soil texture and drainage conditions) worked together to increase ground temperature and ALT. These research results could provide important scientific basis for the protection of boreal forest and wetlands and the ecosystem‐protected permafrost under a warming climate.