Cytochrome c oxidase assembly process involves many accessory proteins including Cox11, which is a copper-binding protein required for Cu incorporation into the Cu B site of cytochrome c oxidase. In a genome wide search, a number of Cox11 homologs are found in all of the eukaryotes with complete genomes and in several Gram-negative bacteria. All of them possess a highly homologous soluble domain and contain an Nterminal fragment that anchors the protein to the membrane. An anchor-free construct of 164 amino acids was obtained from Sinorhizobium meliloti, and the first structure of this class of proteins is reported here. The apoform has an immunoglobulin-like fold with a novel type of -strand organization. The copper binding motif composed of two highly conserved cysteines is located on one side of the -barrel structure. The apoprotein is monomeric in the presence of dithiothreitol, whereas it dimerizes in the absence of the reductant. When copper(I) binds, NMR and extended x-ray absorption fine structure (EXAFS) data indicate a dimeric protein state with two thiolates bridging two copper(I) ions. The present results advance the knowledge on the poorly understood molecular aspects of cytochrome c oxidase assembly.Cytochrome c oxidase (CcO) 1 is the terminal enzyme in the electron transport system, reducing oxygen to water and generating the proton gradient that drives ATP synthesis. Multiple subunits and several cofactors are necessary for catalytic activity including two hemes a, a magnesium ion, a zinc ion, and three copper ions. In particular, the copper ions are located in subunits COX I and COX II, which contain the Cu B and Cu A centers, respectively. The insertion of these cofactors and assembly of the CcO complex in the inner mitochondrial membrane requires accessory proteins (for a general review, see Ref.1). It has recently become clear that the required metal ions cannot simply diffuse to the requisite compartment of the cell for insertion into the desired protein, but a complex machinery of metal importers and chaperones is required (2). In eukaryotes, two metallochaperones, Cox17 and Cox19, were proposed to shuttle copper in the mitochondrion (3, 4). Other nuclear genes also are required for the proper insertion of copper into CcO (5-8). In particular, it is well established that a mitochondrial inner membrane protein, Sco1, interacting with COX II subunit (9), is important for copper insertion into the binuclear Cu A site (10, 11). On the contrary, the process through which copper is provided to COX I subunit, which contains a copper ion buried 13 Å below the membrane surface, still remains essentially obscure, even if it is known that it requires another mitochondrial inner membrane protein, Cox11. Cox11 was first shown to be implicated in the CcO maturation process from the observation that ⌬cox11 yeast lacked CcO activity and was deficient in heme a (5). It was also observed that, for cox11 mutants lacking CcO activity, RNA and protein synthesis of the core subunits I and II are normal, sugg...