The Th1-associated chemokines CXCL-9, CXCL-10, CXCL-11 coordinate migration of CXCR3+Th1 cells. The objective of this study was to evaluate the role of the innate immune system in stimulating chemokine expression in an experimental model of dry eye and bridge the gap between innate and adaptive immunity. Desiccating stress (DS) induced very early (six hours) expression and production of Th1-associated chemokine in cornea and conjunctiva of C57BL/6 and recombination activating gene 1 (RAG1) knock out (KO) strains, demonstrating that chemokine expression does not require innate T cells. We then demonstrated that activating the innate immune system prior to adoptive transfer of T cells to RAG1KO increased disease severity. Interestingly, lack of induction of chemokines CXCL-9, CXCL-10, CXCL-11 in IFN-γKO mice, provided evidence that their expression requires IFN-γ for induction. Treatment of RAG1KO mice with anti-NK1.1 prevented the increase of CXCL9, CXCL10, and CXCL11 in response to DS, compared to isotype controls. Additionally, DS increased the expression of NKG2D in the conjunctiva. The expression of the NKG2D ligand, RAE-1, also increased at the ocular surface at both the protein and gene level. Neutralization of NKG2D at the ocular surface decreased the expression of CXCL-9, CXCL-10, CXCL-11 and IFN-γ. In summary, upregulation of CXCL9, CXCL-10, and CXCL-11 expression in experimental dry eye is T cell independent, requiring IFN-γ-producing NKG2D+ NK cells that are activated in response to DS induced stress signals. This work provides insight about the events that trigger the initial immune response in dry eye pathology.