Collectively, the data demonstrate that the dynamic modification of the charge of a cytoplasmic residue regulates ␥, consistent with the existence of cytoplasmic portals that impose a rate-limiting barrier to ion conduction in Cys loop receptors.Cysteine loop (Cys loop) receptors encompass five families of gene products. Nicotinic-acetylcholine (nACh) 3 receptors, 5-hydroxytryptamine type-3 (5-HT 3 ) receptors, and Zn 2ϩ -activated channels conduct cations, whereas ␥-aminobutyric acid type A and glycine receptors conduct anions (1). Cys loop receptor subunits combine as pentamers forming a central ion pore that traverses the plasma membrane. Studies examining the role of residues comprising the pore-lining second transmembrane (TM2) helices of the nACh receptor led to the traditional view that this region of Cys loop receptors serves as the rate-limiting barrier to ion flux. Among the cationselective Cys loop receptor subunits, conserved acidic residues influence unitary conductance (␥) by forming concentric rings of negative charge positioned along the vertical axis of the central pore (2).Although the role of residues within the TM2 helix of Cys loop receptors in controlling ␥ is well established, recent studies demonstrate a similar function for residues located in the large cytoplasmic TM3-4 loop (1, 3, 4). Based on a 4.6 Å resolution cryoelectron microscopy image of the Torpedo marmorata nACh receptor, Miyazawa et al. (5) first speculated that amino acids in the TM3-4 loop form "transverse tunnels" that may contribute to the ion conduction pathway. Subsequent electrophysiological studies demonstrated that cytoplasmic residues within membrane-associated (MA) helices of the 5-HT 3 and ␣ 4  2 nACh receptors are determinants of ␥ (3, 4). Arg 436 in the 5-HT 3A subunit at a position termed MA 0Ј is critical for maintaining the anomalously low ␥ (ϳ900 femtosiemens) that is a hallmark of the homomeric 5-HT 3A receptor. Furthermore, introduction of MA 0Ј Arg into ␣ 4  2 nACh receptors halved ␥ (4).A 4 Å resolution model of the T. marmorata nACh receptor indicates that adjacent MA helices frame portals with apertures only slightly larger than partially hydrated permeant cations (6). Using this structure as a template, homology models of the 5-HT 3A and ␣ 4  2 nACh receptors indicate that charged amino acids line their cytoplasmic portals (4).Although it is now clear that specific MA helix residues influence the ␥ of nACh and 5-HT 3 receptors, it remains to be determined whether their charge plays a role. We used substituted cysteine modification to address this question, a method fre-