In
biological membranes, lipid rafts are now thought to be transient
and nanoscopic. However, the mechanism responsible for these nanoscopic
assemblies remains poorly understood, even in the case of model membranes.
As a result, it has proven extremely challenging to probe the physicochemical
properties of lipid rafts at the molecular level. Here, we use all-atom
molecular dynamics (MD) simulations and inelastic X-ray scattering
(IXS), an intrinsically nanoscale technique, to directly probe the
energy transfer and collective short-wavelength dynamics (phonons)
of biologically relevant model membranes. We show that the nanoscale
propagation of stress in lipid rafts takes place in the form of collective
motions made up of longitudinal (compression waves) and transverse
(shear waves) molecular vibrations. Importantly, we provide a molecular
picture for the so-called van der Waals mediated “force from
lipid” [Proc. Natl. Acad. Sci. U.S.A.20141117898], a key parameter for
the ionic channel mechano-transduction and the mechanism for the lipid
transfer of molecular level stress [J. Am. Chem. Soc.201713913588]. Specifically, we describe how lipid rafts are formed and maintained
through the propagation of molecular stress, lipid raft rattling dynamics,
and a relaxation process. Eventually, the rafts dissipate through
the self-diffusion of lipids making up the rafts. We also show that
the molecular stress and viscoelastic properties of transient lipid
rafts can be modulated through the use of hydrophobic biomolecules
such as melatonin and tryptophan. Ultimately, the herein proposed
mechanism describing the molecular interactions for the formation
and dissolution of lipid rafts may offer insights as to how lipid
rafts enable biological function.