The human papillomavirus (HPV) type 16 E1 E4 (16E1 E4) protein is expressed in the middle to upper layers of infected epithelium and has several roles within the virus life cycle. It is apparent that within the epithelium there are multiple species of 16E1 E4 that differ in length and/or degree of phosphorylation and that some or all of these can associate with the cellular keratin networks, leading to network disruption. We show here that the cellular cysteine protease calpain cleaves the 16E1 E4 protein after amino acid 17 to generate species that lack the N terminus. These C-terminal fragments are able to multimerize and form amyloid-like fibers. This can lead to accumulation of 16E1 E4 and disruption of the normal dynamics of the keratin networks. The cleavage of E1 E4 proteins by calpain may be a common strategy used by ␣-group viruses, since we show that cleavage of type 18 E1 E4 in raft culture is also dependent on calpain. Interestingly, the cleavage of 16E1 E4 by calpain appears to be highly regulated as differentiation of HPV genome-containing cells by methylcellulose is insufficient to induce cleavage. We hypothesize that this is important since it ensures that the formation of the amyloid fibers is not prematurely triggered in the lower layers and is restricted to the upper layers, where calpain is active and where disruption of the keratin networks may aid virus release.Papillomaviruses are small DNA viruses that infect epithelial tissue and can give rise to hyperproliferative lesions (16). The majority of these lesions are benign, but a small number of papillomaviruses, so called high-risk types, cause lesions that may become malignant. Human papillomavirus type 16 (HPV16) is such a virus and is responsible for the majority of cases of cervical cancer (35). As with all PV, the life cycle of HPV16 is tightly linked to the differentiation of the host epithelium. Initial infection occurs in the basal cells, and as these cells divide and move toward the surface of the epithelium, differentiating as they ascend, the expression of different viral proteins is triggered (reviewed in reference 9). In the upper layers of the epithelium, the viral DNA is vastly amplified for packaging into new virions. Coincident with this is the highlevel expression of the viral E1 E4 protein, the product of a spliced transcript of the E1 and E4 open reading frames (ORFs) (15). However, while viral DNA replication occurs in the nucleus, 16E1 E4 appears to be cytoplasmic, and its exact function in the virus life cycle is not fully understood.The HPV16 E1 E4 protein appears to have multiple activities that may contribute to different aspects of the virus life cycle. HPV16 mutants with disrupted E4 ORFs show altered abilities to replicate viral DNA (24). In particular, consistent with other PV types, these mutants have less viral DNA amplification in the late stages of the virus life cycle. Possibly related to this, it has been shown that 16E1 E4 has the ability to bind to Cdk/cyclin complexes and arrest the cell cycle prior to...