This experiment was conducted to investigate the effects of compound probiotics on growth performance, serum biochemical and immune indices, antioxidant capacity, and the intestinal tissue morphology of Shaoxing ducks. A total of 640 1-day-old healthy Shaoxing ducks of similar body weight were randomly divided into two treatment groups with eight replicates each and forty ducks per replicate. The ducks were fed a basal diet (Ctrl) or a basal diet supplemented with 0.15% compound probiotics (CP) for 125 d. The results revealed that the live body weight (BW; day 85 and 125) and the average daily gain (ADG; 28–85 and 85–125 d) of the CP group were significantly higher (p < 0.05) than those of the Ctrl group. In the CP group, total protein and total cholesterol contents were significantly increased (p < 0.05) on days 28 and 85, while triglyceride and low-density lipoprotein contents were significantly decreased (p < 0.05) on day 85. Furthermore, interferon-γ content was significantly increased (p < 0.05) in the CP group on days 28, 85, and 125. Interleukin-2 content was significantly increased (p < 0.05) in the CP group on days 28 and 85. Interleukin-4 content was significantly decreased (p < 0.05) in the CP group on day 85. Moreover, in the CP group, superoxide dismutase content was significantly increased (p < 0.05) on days 28 and 125, and glutathione peroxidase content was significantly increased (p < 0.05) on day 125. The crypt depth (CD) in the duodenum of the CP group was significantly decreased (p < 0.05) on days 28 and 125, whereas the villus height (VH) in the jejunum of the CP group was significantly increased (p < 0.05) on days 85 and 125. The VH/CD ratio in the ileum of the CP group was significantly increased (p < 0.05) on days 28 and 85. The VH in the ileum of the CP group was significantly increased (p < 0.05) on day 28. The CD in the ileum of the CP group was significantly decreased (p < 0.05) on day 28. In summary, the compound probiotics improved the growth performance, increased serum biochemical and immune indices, increased antioxidant capacity, and improved the intestinal tissue morphology of Shaoxing ducks.