We conducted seismic evaluations of a traditional wooden building using threedimensional earthquake response analyses. The building is registered as one of the "Historic Monuments of Ancient Kyoto", UNESCO World Heritage Site, and is located in a region of strong earthquake motion from a scenario earthquake. The structure is an invaluable asset, but it is at risk of damage resulting from earthquake. Our numerical estimation was based on a dynamic interaction analysis between the building and the surrounding ground because it was located on the slope of a hill with complicated geophysical features. We also conducted a dynamic non-interaction analysis of the structure for a comparison with the aforementioned interaction model. Boring explorations and geotechnical tests were conducted before the assessment in order to investigate the ground foundation. We included the surrounding ground for a more realistic analysis because the seismic estimation for a model consisting only of the main structure differs significantly from that of the structureground coupling model. The results showed that the main wooden building was at risk of partial damage as it exceeded the safety limits prescribed for a scenario earthquake, and would collapse in the case of double the amplitude of the scenario earthquake.