The presence of plasma proteins in urine is difficult to interpret quantitatively. It may be a result of impaired glomerular filtration or impaired proximal tubule (PT) reabsorption, or both. r Dent1 disease (CLCN5 mutation) abolishes PT protein reabsorption leaving glomerular function intact. Using urine protein measurements from patients with Dent1 disease and normal individuals, we devised a mathematical model that incorporates two PT transport processes with distinct kinetics. This model predicts albumin, α 1-microglobulin (α 1-m), β 2-microglobulin (β 2-m) and retinol-binding protein 4 (RBP4) urine concentrations. r Our results indicate that the urinary excretion of β 2-m and RBP4 differs from that of albumin and α 1-m in their sensitivity to changes in the glomerular filtration rate, glomerular protein leak, tubular protein uptake via endocytosis and PT water reabsorption. r The model predicts quantitatively how hyperfiltration and glomerular leak interact to promote albuminuria. r Our model should contribute to improved understanding and interpretation of urine protein measurements in renal disease.