Herbicides resistance has challenged sustainable rice productivity. Consequently, interest in chemical-free weed management has increased to overcome this constraint. This chapter has demonstrated the effect of pre-sowing microwave soil heating as a new alternative to chemicals for confirmed herbicide resistant weeds of the Australian rice production system. Microwave can superheat weed plants, creating micro-steam explosions in the plant structures to kill weeds. This requires the least amount of energy to achieve weed control and can be likened to a 'knock down' herbicide treatment. Considerably, more microwave energy can be applied to the soil to achieve weed seed bank deactivation; however, there is growing evidence that this strategy also changes the soil biota and nutrient profile in favour of substantial increases in crop yield, when crops are planted into this microwave-treated soil. An energy application of approximately 400-500 J cm −2 gave approximately 70-80% reduction in weed establishment in three field trials conducted at two agro-ecological zones of the Australia. In addition, there was a 10 times higher nitrogen use efficiency, and a 37% higher water use efficiency was achieved through this aspect of the microwave technology. There is also evidence that the soil treatment strategy provides persistent effects, beyond a single season; therefore, the rice production is better than when using conventional weed control methods.