ObjectivesNKG2D is an activating receptor expressed by natural killer (NK) and CD8+ T cells and activation intensity varies by NKG2D expression level or nature of its ligand. An NKG2D gene polymorphism determines high (HNK1) or low (LNK1) expression. MICA is the most polymorphic NKG2D ligand and stronger effector cell activation associates with methionine rather than valine at residue 129. We investigated correlation between cord blood (CB) NKG2D and MICA genotypes and haematopoietic stem cell (HSC) transplant outcome.MethodsWe retrospectively studied 267 CB HSC recipients (178 adult and 87 paediatric) who underwent transplant for malignant disease between 2007 and 2018, analysing CB graft DNA for NKG2D and MICA polymorphisms using Sanger sequencing. Multivariate analysis was used to correlate these results with transplant outcomes.ResultsIn adult patients, LNK1 homozygous CB significantly improved 60‐day neutrophil engraftment (hazard ratio (HR) 0.6; 95% confidence interval (CI) 0.4–0.9; p = .003). In paediatrics, HNK1 homozygous CB improved 60‐day engraftment (HR 0.4; 95% CI 0.2–0.7; p = .003), as did MICA‐129 methionine+ CB grafts (HR 1.7 95% CI 1.1–2.6; p = .02).ConclusionCB NKG2D and MICA genotypes potentially improve CB HSC engraftment. However, results contrast between adult and paediatric recipients and may reflect transplant procedure disparities between cohorts.