Objective: Cold plasma (CP) treatment is used to remove contaminants like ergosterol (ERG) in cereal foods. Methods: The conversion of ERG into vitamin D (VD), gelatinization properties and fatty acid (FA) profiles were evaluated in wheat shorts treated with 120W low-pressure radiofrequency oxygen or helium CP for 90-120s. Results: Compared with the untreated samples, 46-64% of ERG was degraded and produced a maximum amount of vitamin D2 and Vitamin D3-like compounds in the 120W CP 90-120s treated samples. Oxygen CP had a higher capacity to degrade ERG than helium CP. The peak temperature of gelatinization was increased by both CP treatments, while the other gelatinization properties were not changed. The content of mono-unsaturated free fatty acids (FAs) in wheat shorts had no significant change, 88.3-95% of total FAs, 82.2-89.1% of unsaturated FAs and 80.4-87.2% of polyunsaturated FAs were maintained. Helium CP increased the contents of C18: 0, C18: 1n9c, C18: 1n9t, and C20: 3n6 and saturated FAs, and reduced the C20: 1 and mono-unsaturated FAs content. Oxygen CP did not change C18: 0, C18: 1n9c, C18: 1n9t, and C20: 1 contents, but reduced the C20: 3n6 content. The oxygen CP oxidized polyunsaturated FAs, leading to a decrease in the unsaturated FA content, while helium plasma caused the decomposition of monounsaturated and polyunsaturated FAs, and partially converted some unsaturated FAs into saturated FAs. Conclusion: CP treatment is useful to change ERG into VD in wheat shorts.