Site-directed mutagenesis in the photosystem II (PSII) oxygen-evolving enzyme was achieved in the thermophilic cyanobacterium Thermosynechococcus elongatus. PSII from this species is the focus of attention because its robustness makes it suitable for enzymological and biophysical studies. PSII, which lacks the redox-active tyrosine Tyr D , was engineered by substituting a phenylalanine for tyrosine 160 of the D2 protein. An aim of this work was to engineer a mutant for spectroscopy, in particular, for EPR, on the active enzyme. The Tyr D• EPR signal was monitored in whole cells (i) to control the expression level of the two genes (psbD 1 and psbD 2 ) encoding D2 and (ii) to assess the success of the mutagenesis. Both psbD 1 and psbD 2 could be expressed, and recombination occurred between them. The D2-Y160F mutation was introduced into psbD 1 after psbD 2 was deleted and a His-tag was attached to the CP43 protein. The effects of the Y160F mutation were characterized in cells, thylakoids, and isolated PSII. The efficiency of enzyme function under the conditions tested was unaffected. The distribution and lifetime of the redox states (S n states) of the enzyme cycle were modified, with more S 0 in the dark and no rapid decay phase of S 3 . Although not previously reported, these effects were expected because Tyr D• is able to oxidize S 0 and Tyr D is able to reduce S 2 and S 3 . Slight changes in the difference spectra in the visible and infrared recorded upon the formation and reduction of the chlorophyll cation P 680 + and kinetic measurements of P 680 + reduction indicated minor structural perturbations, perhaps in the hydrogen-bonding network linking Tyr D and P 680 , rather than electrostatic changes associated with the loss of a charge from Tyr D• (H + ). We show here that this fully active preparation can provide spectra from the Mn 4 CaO 4 complex and associated radical species uncontaminated by Tyr D• .Photosystem II (PSII) 1 catalyses light-driven water oxidation and plastoquinone reduction in cyanobacteria, algae, and plants (1-6). Water oxidation takes place at a Mn 4 CaO 4 cluster, a structural model for which has been recently proposed based on X-ray crystallography (7). This model is largely consistent with earlier spectroscopic work (8,9). PSII is a membrane-spanning complex constituted of at least 16 subunits including the central D1/D2 dimer that is surrounded by CP43 and CP47, cytochrome b559, 11 small polypeptides, and 3 extrinsic proteins, including the cytochrome c550. PSII contains chlorophylls (Chls), carotenoids, pheophytins, plastoquinones, a non-heme iron, a calcium, and 4 manganese ions. Although the deduced amino acid sequences of D1 and D2 share a rather low homology (30%) (10,11), the important amino acid residues such as those that act as ligands to the cofactors are conserved. The central Chl molecules (P D1 and P D2 , Chl D1 and Chl D2 ), pheophytins (Pheo D1 and Pheo D2 ), plastoquinones (Q B and Q A ), peripheral Chls (Chl ZD1 and Chl ZD2 ), and two redox-active tyrosi...