Mice lacking؊/؊ liver, we performed biophysical, biochemical, and molecular studies. In the setting of decreased Sod2 levels and increased oxidative stress, we found reduced respiration, sensitized mitochondrial permeability transition pore opening, intact electron transport chain activities, and impaired mitochondrial aconitase activity. Mitochondrial aconitase protein levels were preserved, whereas mRNA and protein levels for frataxin, the oxidative stress-regulated mitochondrial aconitase chaperone protein, were markedly reduced in Epas1 ؊/؊ livers. The mouse Fxn promoter was preferentially activated by HIF-2␣ through a consensus HIF-responsive enhancer element. In summary, the studies reveal that Fxn, like Sod2, is a nuclear-encoded, mitochondrial-localized HIF-2␣ target gene required for optimal mitochondrial homeostasis. These findings expand upon the previously defined role of HIF-2␣ in the cellular response to oxidative stress and identify a novel link of HIF-2␣ with mitochondrial homeostasis.