Plantain contributes significantly to income generation and food security for millions of people in the world. However, it faces problems of seedlings quantity, quality and availability. The innovation of the "plants issus de fragments de tiges" (PIF) technique could be a solution to these problems for small holders' farmers. The aim of this research is to evaluate the effect of clam shells through amendment of Batard and Big Ebanga PIF substrate, on the growth promotion of seedlings and their protection against black Sigatoka disease (BSD). Plantain PIF seedlings of the two varieties were grown in a substrate amended with 1% concentration of the clam shells powder in the presence of negative control in the sterile and non-sterile conditions. Agromorphological characteristics, susceptibility level to BSD, total proteins and polyphenols content were assessed. Because of the presence of clam shells in the substrates, explants germinated quickly, generated high number of shoots, grew taller by 32%, with a diameter of pseudo stems of 30%, and area of leaves of 18% compared to control. In addition, the seedlings were less susceptible to BSD by 73% compared to those of controls. The treatment seems to allow the accumulation of larger amounts of total proteins and polyphenols before inoculation and after inoculation that could participate in the growth promotion and the reduction of plant's susceptibility level. Clam shells treatment acts as a biofertilizer/biopesticide and could be helpful to boost production of plantain seedlings, the use of the by-products of fishing in agriculture and helps alleviate poverty of small holders' farmers.