The soluble form of guanylyl cyclase-activating-factor (GAF) synthase from rat cerebellum was purified to homogeneity by sequential affinity chromatographic steps on adenosine 2',5'-bisphosphate (2',5'-ADP)-Sepharose and calmodulin-agarose. Enzyme activity during purification was bioassayed by the L-arginine-, NADPH-, and with a molecular mass ofabout 155 ± 3 kDa. These data suggest that soluble GAF synthase purified from rat cerebellum is a homodimer of 155-kDa subunits and that enzyme activity is dependent upon the presence of calmodulin.In various mammalian cell types [e.g., macrophages (1), endothelial cells (2), polymorphonuclear neutrophils (3, 4), brain (5, 6), and neuronal cell lines (7, 8)], L-arginine is oxidized to yield the endothelium-derived relaxing factor with physicochemical and pharmacological properties similar to nitric oxide (NO) or a NO-containing compound (9, 10). Both within the same cell and in specific target cells, this NO-like factor (or group offactors) activates soluble guanylyl cyclase, thereby acting as an intra-and intercellular signal molecule to regulate the intracellular concentration of cGMP (11)(12)(13)(14). Earlier studies have demonstrated that L-arginine could activate guanylyl cyclase in brain and neuronal cells (15, 16); however, the mechanisms were not elucidated. This laboratory has proposed (17, 18) that hormonal regulation of cGMP accumulation could be mediated through such a signal transduction pathway. Since the exact chemical structure of this ubiquitous factor (or group of factors) remains to be clarified (19,20), we suggest the preliminary name of guanylyl cyclase-activating factor (GAF). The formation of GAF from L-arginine is catalyzed by an NADPH-dependent GAF synthase (6,(21)(22)(23)(24)(25). GAF synthase and its target enzyme, soluble guanylyl cyclase, represent the protein components of this signal-transduction pathway (13,14,17,18,26,27). In rat cerebellum, GAF synthase activity is due to a cytosolic Ca2+/calmodulin-regulated isoform of the enzyme. GAF synthase was found to catalyze the conversion of L-arginine to both L-citrulline and a labile NO-like activator of soluble guanylyl cyclase (i.e., GAF). The enzyme was purified by the sequential use of two affinity chromatography columns, ADP-Sepharose and calmodulin-agarose, from the crude supernatant fraction to homogeneity (8925-to 10,076-fold, assayed by citrulline and soluble guanylyl cyclase stimulation, respectively). Purified GAF synthase is a (homo)dimer of protein subunits of 155 ± 3 kDa. Some of these observations have been presented in abstract form (28-30).MATERIALS AND METHODS Materials. Calmodulin-agarose and Sepharose 4B were obtained from Sigma. All other column materials and standard marker proteins were purchased from Pharmacia. Glycine and Tris (Bio-Rad) and SDS (Boehringer Mannheim) were of electrophoresis grade. All other reagents were of analytical grade. Biotinylated calmodulin, biotinylated alkaline phosphatase, and avidin were kindly provided