Climate change leads to summer low flow conditions and premature litter input in lowland streams in Central Europe. This may cause a sudden reduction of flow and fragmentation into isolated pools of permanently flowing streams, with a simultaneous increase in the food supply for detrivores during summer months. We performed a mesocosm study to investigate shredder and microbial mediated litter decomposition under these conditions. Leaf litter was placed in a lowland stream with a natural flow regime (reference) and in a stream mesocosm with significant flow reduction (FR) and a representative density of macroinvertebrates and detritus. Physicochemical parameters, leaf mass loss, macroinvertebrate abundance and biomass, leaf-associated respiration, fungal sporulation, and biomass were measured at regular intervals for 6 weeks. Coarse and fine-mesh bags were used to include or exclude macroinvertebrate shredders. In the coarse-mesh bags, leaf mass loss was significantly lower in the FR system than in the reference regime. In the fine-mesh bags, leaf respiration, fungal sporulation, and biomass but not leaf mass losses were substantially lower with flow reduction.Chironomid larvae (Micropsectra spp.) appeared to effectively fragment leaf litter in fine-mesh bags. In the FR system, leaf respiration was higher in the coarsethan in the fine-mesh bags. Our results suggest that, in temperate lowland streams, premature litter input during or after a sudden fragmentation into isolated pools and a reduction of stream flow reduces direct shredder-mediated litter decomposition, but shredders may indirectly influence the decomposition process.