“…In environmental microbiology it is an invaluable approach to further link microbial activity, via gene expression, to microbial and ecosystem processes, compared to DNA approaches alone (Smith and Osborn, ; Saleh‐Lakha et al ., ; Gadkar and Filion, ). As a result the approach has been used to quantify transcripts to distinguish different pathways of the nitrogen cycle in sediments (Smith et al ., ; Santoro et al ., ; Zheng et al ., ; Damashek et al ., ; Duff et al ., ; Santos et al ., ; Zhang et al ., ), soil (Leininger et al ., ; Graham et al ., ; Wang et al ., ; Li et al ., ; Pierre et al ., ), water column (Santoro et al ., ; Kapoor et al ., ; Tolar et al ., ; Posman et al ., ; Feng et al ., ; Gonçalves et al ., ; Liu et al ., ; Christiansen et al ., ) and other microbial processes including water treatment (Botes et al ., ; Gadkar and Filion, ; Wang et al ., ; Pelissari et al ., , ) and bioremediation (Yergeau et al ., ; Marzorati et al ., 2010; Gadkar and Filion, ). In addition to this, cDNA from mRNA or rRNA can undergo PCR for amplicon sequencing to reveal actively transcribing organisms within the environment (Duff et al ., ; Zhang et al ., ; Cholet et al ., ).…”