Accurate quantification of Cryptosporidium parvum oocysts in animal fecal deposits on land is an essential starting point for estimating watershed C. parvum loads. Due to the general poor performance and variable recovery efficiency of existing enumeration methods, protocols were devised based on initial dispersion of oocysts from feces by vortexing in 2 mM tetrasodium pyrophosphate, followed by immunomagnetic separation. The protocols were validated by using an internal control seed preparation to determine the levels of oocyst recovery for a range of fecal types. The levels of recovery of 10 2 oocysts from cattle feces (0.5 g of processed feces) ranged from 31 to 46%, and the levels of recovery from sheep feces (0.25 g of processed feces) ranged from 21% to 35%. The within-sample coefficients of variation for the percentages of recovery from five replicates ranged from 10 to 50%. The ranges for levels of recovery of oocysts from cattle, kangaroo, pig, and sheep feces (juveniles and adults) collected in a subsequent watershed animal fecal survey were far wider than the ranges predicted by the validation data. Based on the use of an internal control added to each fecal sample, the levels of recovery ranged from 0 to 83% for cattle, from 4 to 62% for sheep, from 1 to 42% for pigs, and from 40 to 73% for kangaroos. Given the variation in the levels of recovery of oocysts from different fecal matrices, it is recommended that an internal control be added to at least one replicate of every fecal sample analyzed to determine the percentage of recovery. Depending on the animal type and based on the lowest approximate percentages of recovery, between 10 and 100 oocysts g of feces ؊1 must be present to be detected.The protozoan parasite Cryptosporidium parvum is a major cause of waterborne diarrheal illness in human and animal populations. The transmissive form of this organism, the oocyst, frequently finds its way into surface waters, either directly through sewage discharge or indirectly in runoff from land grazed by livestock or wildlife. Oocysts present in animal fecal deposits on land are clearly responsible for many event-related increases in the concentrations of in-stream pathogens in watersheds (3, 8). However, there are significant knowledge gaps regarding the mechanisms and magnitude of pathogen transport and the effects of environmental factors on oocyst inactivation (7). In particular, there have been few attempts to predict the fate of oocysts deposited on land by using quantifiable parameters. The responsible authorities are advocating adequate watershed management as a fundamental requirement for reducing pathogen risks to drinking water quality, and the United States Environmental Protection Agency is seeking estimates of total maximum daily loads for watershed pathogens (18). The quantification of transport mechanisms and environmental inactivation for key pathogens should enable models to be constructed that can be used to predict source water quality in order to better manage the factors that govern p...