Phospholipid-derived fatty acids (PLFA) are widely used as chemotaxonomic markers in microbial ecology. In this paper we explore the use of PLFA as chemotaxonomic markers for phytoplankton species. The PLFA composition was determined for 23 species relevant to estuarine phytoplankton. The taxonomic groups investigated were Chlorophyceae, Trebouxiophyceae, Prasinophyceae, Bacillariophyceae, Dinophyceae, Cryptophyceae, Rhodophyceae, Pavlovophyceae and Prymnesiophyceae. Most of these taxonomic groups have a characteristic PLFA composition, although a few contain truly unique PLFA biomarkers. The PLFA composition was used to derive species composition and abundance of the phytoplankton in the Scheldt estuary (border region between Belgium and the Netherlands) in April, July and October 2003, using the matrix factorization program CHEMTAX. The results agree well with results from HPLC-derived pigment analysis of the same samples. The advantages of using PLFA instead of pigments, or rather in addition to pigments, are that (1) information on bacteria can be derived in addition to information on photosynthetic taxa, (2) in some cases more or different taxa can be distinguished and (3) the isotopic composition of PLFA can be measured relatively easily, allowing the measurement of group-specific primary production.KEY WORDS: Phytoplankton composition · Phospholipid-derived fatty acids · PLFA · Scheldt estuary · Biomarkers · CHEMTAX
Resale or republication not permitted without written consent of the publisherMar Ecol Prog Ser 324: [113][114][115][116][117][118][119][120][121][122][123][124][125] 2006 microscopic enumerations require a trained microscopist and are time-consuming. Furthermore, in most cases, the algae have to be stored and therefore fixed before analysis and not all taxa withstand fixation well (Gieskes & Kraay 1983). Often, cell numbers are difficult to compare due to large differences in cell size and volume and cell numbers have to be converted to biovolume (e.g. Hillebrand et al. 1999) or carbon (Menden-Deuer & Lessard 2000), a tedious procedure.The use of chemotaxonomic markers provides an alternative method for determining phytoplankton composition. Photosynthetic pigments are the best known chemotaxonomic markers for phytoplankton. As HPLC technology advances, more and more pigments can be routinely measured, allowing an increasing number of taxa to be distinguished (e.g. Zapata et al. 2004, Jeffrey & Wright 2006. In recent years, several studies have compared cell numbers and pigments, and in general a good agreement is found between these 2 methods both in freshwater and marine ecosystems (e.g. Garibotti et al. 2003, Marinho & Rodrigues 2003. Even groups lacking specific pigments can be detected with the help of pigment ratios using matrix factorization programs such as CHEMTAX (Mackey et al. 1996, Schlüter & Møh-lenberg 2003.Bacteria are also an important constituent of aquatic ecosystems. Suitable pigment biomarkers are lacking for bacteria, and phospholipid-derived fatty acids (PLF...