This investigation was carried out on commercial organic field in the Fayoum Governorate of Egypt under conditions of natural infection, 2020/2021 and 2021/2022 to evaluate the effectiveness of four commercial biocides—Blight Stop (Trichoderma harzianum), Bio Zeid (T. album), Root Guard (Bacillus subtilis), and Bio ARC (B. megaterium)—as well as, four biocontrol agents (T. harzianum, T. album, B. subtilis, and B. megaterium) in controling Cercospora beticola Sacc, the main causal of Cercospra leaf spot (CLS) disease on sugar beet in an organic farming systems. All biocontrol agents and commercial biocides sprayed at the recommended dose in a two spray regime with 15 days between sprays, were significantly reduced Cercospora beticola, total amino acid and juice impurities (K, Na and α-a N %) in comparison to control treatment. All bioagents and biocides put to the test resulted in a significant rise in phenolic compound values, total chlorophyll, sucrose (%), purity (%), root, top and sugar yield quality of sugar beet during both seasons. Spraying Blight Stop was the most effective treatment followed by T. harzianum. B. megaterium was the least effective biocide treatment compared with the control treatment during the two growing seasons.