2022
DOI: 10.1021/acsomega.1c07144
|View full text |Cite
|
Sign up to set email alerts
|

ELIXIR-A: An Interactive Visualization Tool for Multi-Target Pharmacophore Refinement

Abstract: Pharmacophore modeling is an important step in computer-aided drug design for identifying interaction points between the receptor and ligand complex. Pharmacophore-based models can be used for de novo drug design, lead identification, and optimization in virtual screening as well as for multi-target drug design. There is a need to develop a user-friendly interface to filter the pharmacophore points resulting from multiple ligand conformations. Here, we present ELIXIR-A, a Python-based ph… Show more

Help me understand this report

Search citation statements

Order By: Relevance

Paper Sections

Select...
1
1
1

Citation Types

0
3
0

Year Published

2023
2023
2024
2024

Publication Types

Select...
3
3

Relationship

0
6

Authors

Journals

citations
Cited by 9 publications
(3 citation statements)
references
References 79 publications
0
3
0
Order By: Relevance
“…[35][36][37][38] One of the approaches to the drug design of multitarget compounds and the prediction of the biotarget spectrum of molecules can be the identification of basic pharmacophore models. [39,40] Previously, we published a review that describes a large set of different cardioprotective agents with different mechanisms of action, corresponding to a single pharmacophore model. [41] This model contains two aromatic cycles (marked violet) connected by a linker (indicated by green) with the length of about 5-15 bonds and with at least one heteroatom in it (Figure 1).…”
Section: Cvd and Multitargetingmentioning
confidence: 99%
“…[35][36][37][38] One of the approaches to the drug design of multitarget compounds and the prediction of the biotarget spectrum of molecules can be the identification of basic pharmacophore models. [39,40] Previously, we published a review that describes a large set of different cardioprotective agents with different mechanisms of action, corresponding to a single pharmacophore model. [41] This model contains two aromatic cycles (marked violet) connected by a linker (indicated by green) with the length of about 5-15 bonds and with at least one heteroatom in it (Figure 1).…”
Section: Cvd and Multitargetingmentioning
confidence: 99%
“…7 Prediction accuracy of active compounds (sensitivity) on the combined set, %. 8 Prediction accuracy of inactive compounds (specificity) on the combined set, %. 9 Accuracy according to ROCanalysis on the combined set, %.…”
Section: Neural Network Modelingmentioning
confidence: 99%
“…An increase in the accuracy of building visualized multitarget 3D pharmacophores is provided by the ELIXIR-A plugin for VMD, which is used to refine pharmacophore interaction points between several ligands and several receptors [ 8 ].…”
Section: Introductionmentioning
confidence: 99%